0.79420999999999997154
AT1G24540.1
<html><body><title>AT1G24540.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122454001000i/AT1G24540.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122454001000i/AT1G24540.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122454001000i/AT1G24540.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525110501000i">AT5G51105.1</a></td><td>0.999613</td><td>unknown protein</td><td>OMAT5P014630</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525148001000i">AT5G51480.1</a></td><td>0.99898</td><td>SKS2 (SKU5 SIMILAR 2)</td><td>OMAT5P014800</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520937001000i">AT5G09370.1</a></td><td>0.998514</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>OMAT5P102510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421521001000i">AT4G15210.1</a></td><td>0.998093</td><td>BAM5 (BETA-AMYLASE 5)</td><td>OMAT4P103480</td><td>-</td><td>OMAT4P004230</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u326090001000i">AT3G60900.1</a></td><td>0.997999</td><td>FLA10</td><td>OMAT3P115070</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422426001000i">AT4G24260.1</a></td><td>0.997777</td><td>ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)</td><td>OMAT4P106510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127590001000i">AT1G75900.1</a></td><td>0.997694</td><td>family II extracellular lipase 3 (EXL3)</td><td>OMAT1P022220</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525195001000i">AT5G51950.1</a></td><td>0.997123</td><td>glucose-methanol-choline (GMC) oxidoreductase family protein</td><td>OMAT5P113400</td><td>-</td><td>OMAT5P015030</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224584001000i">AT2G45840.1</a></td><td>0.996582</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT2P012930</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321452001000i">AT3G14520.1</a></td><td>0.995912</td><td>terpene synthase/cyclase family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120102001000i">AT1G01020.1</a></td><td>-0.754623</td><td>ARV1</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321327001000i">AT3G13270.1</a></td><td>-0.683889</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522304001000i">AT5G23040.1</a></td><td>-0.62289</td><td>CDF1 (CELL GROWTH DEFECT FACTOR 1)</td><td>OMAT5P106710</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222705001000i">AT2G27050.1</a></td><td>-0.6147</td><td>EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)</td><td>OMAT2P005910</td><td>-</td><td>OMAT2P105220</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420835101000i">AT4G08351.1</a></td><td>-0.591678</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520121501000i">AT5G01215.1</a></td><td>-0.587777</td><td>other RNA</td><td>-</td><td>-</td><td>OMAT5P000060</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221620001000i">AT2G16200.1</a></td><td>-0.586131</td><td>protein binding / structural molecule</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126052001000i">AT1G60520.1</a></td><td>-0.576039</td><td>pseudogene, putative interferon-induced GTP-binding protein mx, blastp match of 52% identity and 3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB protein {Danio rerio}</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126178001000i">AT1G61780.1</a></td><td>-0.566334</td><td>postsynaptic protein-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524052002000i">AT5G40520.2</a></td><td>-0.565278</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u122454001000i/AT1G24540.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.72e-08</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.72e-08 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006575</td><td>cellular amino acid derivative metabolic process</td><td>10/200</td><td>5.77</td><td>1.55e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>11/200</td><td>4.75</td><td>4.25e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006519</td><td>cellular amino acid and derivative metabolic process</td><td>10/200</td><td>2.88</td><td>8.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>11/200</td><td>2.31</td><td>3.25e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>122/200</td><td>5.02</td><td>1.43e-61</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>152/200</td><td>1.66</td><td>5.83e-19</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004857</td><td>enzyme inhibitor activity</td><td>12/200</td><td>11.47</td><td>5.30e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>13/200</td><td>6.49</td><td>1.72e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>16/200</td><td>2.69</td><td>1.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>28/200</td><td>1.79</td><td>9.16e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020090</td><td>central cell</td><td>10/200</td><td>14.09</td><td>1.54e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020092</td><td>female gametophyte</td><td>13/200</td><td>4.80</td><td>6.78e-07</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>121/200</td><td>5.12</td><td>7.57e-62</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>121/200</td><td>4.99</td><td>1.23e-60</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defensin</td><td>-</td><td>27/200</td><td>20.78</td><td>4.33e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>32/200</td><td>8.53</td><td>1.48e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>secreted</td><td>-</td><td>15/200</td><td>22.27</td><td>9.15e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>70/200</td><td>2.74</td><td>1.44e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>weight</td><td>-</td><td>14/200</td><td>20.78</td><td>2.70e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cysteine</td><td>-</td><td>19/200</td><td>8.63</td><td>1.08e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr006501</td><td>-</td><td>12/200</td><td>16.22</td><td>6.26e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>12/200</td><td>12.79</td><td>1.33e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>19/200</td><td>6.36</td><td>2.86e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>16/200</td><td>6.65</td><td>4.07e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular</td><td>-</td><td>15/200</td><td>7.09</td><td>5.14e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>small</td><td>-</td><td>19/200</td><td>4.72</td><td>5.05e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>46/200</td><td>2.38</td><td>7.49e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>16/200</td><td>4.21</td><td>3.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>15/200</td><td>4.45</td><td>3.39e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pectin</td><td>-</td><td>10/200</td><td>6.60</td><td>4.19e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>modification</td><td>-</td><td>10/200</td><td>5.88</td><td>1.31e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>24/200</td><td>2.69</td><td>3.52e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>sepal</td><td>-</td><td>10/200</td><td>4.63</td><td>1.26e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>28/200</td><td>2.13</td><td>5.12e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>18/200</td><td>2.59</td><td>7.68e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>29/200</td><td>1.99</td><td>1.33e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>29/200</td><td>1.97</td><td>1.52e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>29/200</td><td>1.92</td><td>2.47e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catabolic</td><td>-</td><td>10/200</td><td>3.00</td><td>5.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>22/200</td><td>2.01</td><td>6.51e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>11/200</td><td>2.58</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/200</td><td>1.87</td><td>3.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>31/200</td><td>1.51</td><td>7.38e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_OMAT_gene